rs36908493 SNP Detail

Summary

• ID
  rs36908493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130415501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGGCGG CTTTGCCCAA
  GGCTGTGCTT TCGGTTCCTC TGTGAACAGC TTTCCTGGGG ATTGCAAACT GGACTGTGGC
  CACTGTCATC AGGATGCGTC CTCAGCATGC ACAGCTGGAG GGTTCAGAGG TGAACGTGTC
  CCCCGAGGGG GCTCCACACA GTACCTCTTT CTCCTGTCCT TCCCAAAGCT GGAGGTCCCG
  R
  CTGCTCTGTG TGCTGTTGTT CAAGTGTCAG CAGCCCCCCT CCCAGGGGCT TTCTGAGGTT
  TTGACAAGAG AGGCCTGGGA TGGATGGGTA TCACAAATTG TGTCTTTGTG CTGGCAGGGA
  CCTATGAACA AGTAGATCAG GGGACTGTTG TTTAGCCTCA ACTGTTCCTT GCAAGTTAAT
  GGTGTGTGTG TTTTCAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51851738	NES14692043	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36908493					SNP	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51851738	NES14692043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130415501 () rs orientation: forward

Symbol	Name	Function Class
Caln1	calneuron 1	within coordinates
Rr621524	regulatory region 621524	1774 bp distal
Tssr49064	transcription start site region 49064	1943 bp downstream
Tssr49065	transcription start site region 49065	1900 bp downstream