rs36909339 SNP Detail

Summary

• ID
  rs36909339
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38355123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTGCAA GCCCTAACTT
  TGTCTTTCAC CCCAGTAAAA GCTTTCCTGT GCTGATGTTG TCACGTTTTA TAACACCAGG
  TGGGCTCCTT AGAGCTGTTG TTGTTTAAAA TAACTTCTCC AGTACATTTA GGGCCATCTT
  CTGTCCATTA TAATTACAAC ATGTCTCAAA CAGCCTCTGC AAGGATGCAG AGACTTAAAG
  S
  AATACCACAA CCTTTAGGAA ATCAGGGATC ATTTCAGCTG ATTTAGTAAA TTCAACAGGG
  TGGCATAGAG TGCTATCAGT AACACGGACT TTAGACCATA GTAAGGGAAG CCTCTGCTTT
  GGGTTCTACT GTCACTGTTT GCAAAACTCC TTAGACTCTA CAGGGCTGAG TTCTTGTACT
  CCTTCCTTTA TACCATGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288115	NES13774256	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	C		G	G	C	G
ss133127208	ENSMUSSNP6700412	ENSEMBL	ENSEMBL_Sanger	f	SNP								G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36909339					SNP	G	G	G	G	G	G	C	G	G	C	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288115	NES13774256	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38355123 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	913 bp distal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1034 bp downstream
Rr135132	regulatory region 135132	878 bp proximal
Rr146156	regulatory region 146156	1122 bp distal
Tssr55644	transcription start site region 55644	1450 bp downstream