rs3690980 SNP Detail

Summary

• ID
  rs3690980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36393093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TTGAGCCATG TCTCTAATTG
  R
  TATACCTCAC CCTCAAGGGG CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5067098	WI_WGS_7_27208731	WI	MOUSE	f	SNP	A			G
ss148848864	ENSMUSSNP4398424	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss322166705	CHEV_7_37478687	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3690980					SNP	A	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36393093 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	630 bp proximal
Cpgi18884	CpG island 18884	1509 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	1770 bp upstream
Rr645552	regulatory region 645552	816 bp distal
Rr645553	regulatory region 645553	within coordinates
Rr645554	regulatory region 645554	522 bp proximal