rs36909802 SNP Detail

Summary

• ID
  rs36909802
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149147580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATTGTT ATCAGAACTT
  CTCTGGAGTT ACTAGGAATG GTAGTTAGAT AAAGCCCCGG GTTAATTTCC ATCAATACCA
  AGCTCCTTAC ACCGTTGATA TTTCAAACAT ATAAAAAGCT GTCAATCTTG GTCAGACAGA
  ATAAAGGAGG TGGTTGTTGT AAGACTGAGC AGACATGCCA GTCAATTACA GATGTGATTC
  W
  GTGTTCTACT CTACTAGAGT AACCATTCCT GGCATGCCAC CAGTGAAATA ACTCTTTAAG
  ACTGCTATAA TGCTAATACA GATCAAAAGG AAAAGCGATG AAGAAGTTGA AAAACCAGAA
  AAAGACACCT AGTTCTGGTA TGTCCAGACA ACAGATGGGT AAGTTGGATA AGATATGTTT
  GCTATAGGGA GAGGGAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51052164	NES13893073	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36909802					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052164	NES13893073	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149147580 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	1411 bp upstream
Gm30382	predicted gene, 30382	within coordinates