rs3691104 SNP Detail

Summary

• ID
  rs3691104
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136494102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA TGGCTTTAGT ACAATGTCCT
  W
  CCAATCTGCC TCTAATCAAC ATGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5067224	WI_WGS_6_136873165	WI	MOUSE	f	SNP	T	A
ss133840246	ENSMUSSNP5302046	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss321996246	CHEV_6_136465625	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3691104					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136494102 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	1685 bp upstream
Cpgi18104	CpG island 18104	1497 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	1299 bp proximal
Rr145858	regulatory region 145858	1098 bp proximal
Rr400014	regulatory region 400014	1464 bp upstream
Rr400015	regulatory region 400015	1862 bp upstream
Tssr59315	transcription start site region 59315	1682 bp upstream
Tssr59316	transcription start site region 59316	1716 bp upstream
Tssr59317	transcription start site region 59317	1762 bp upstream
Tssr63803	transcription start site region 63803	1394 bp downstream
Tssr63804	transcription start site region 63804	1657 bp downstream
Tssr63805	transcription start site region 63805	1954 bp downstream