rs3691204 SNP Detail

Summary

• ID
  rs3691204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106765488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA ACTCCCTCAG GCCTTCCACT
  R
  CAACCAGCTC ACACTGCTTC TTTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5067324	WI_WGS_9_107750939	WI	MOUSE	f	SNP			G	A
ss136941076	ENSMUSSNP2302350	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323187620	CHEV_9_106790620	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs3691204					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106765488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22277	CpG island 22277			612 bp distal
Manf	mesencephalic astrocyte-derived neurotrophic factor			Intron
				mRNA-UTR
Rbm15b	RNA binding motif protein 15B			1214 bp upstream
Rr401656	regulatory region 401656			811 bp downstream
Rr686406	regulatory region 686406			998 bp distal
Rr686407	regulatory region 686407			371 bp distal
Rr686408	regulatory region 686408			253 bp distal
Tssr86941	transcription start site region 86941			1852 bp downstream
Tssr86942	transcription start site region 86942			1892 bp upstream
Tssr91351	transcription start site region 91351			1195 bp upstream
Tssr91352	transcription start site region 91352			1177 bp upstream