rs36912545 SNP Detail

Summary

• ID
  rs36912545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:58308522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACTGCAA TTACATGTGA
  AGTTTCCTTC AGCTGTTTCT GCCCTGCAAG TGGCAATGAT ACCCTATCTA TAGAGAACCT
  ATTCAATAGA AGGGAAGTAG AATACAGCCT CTGGTCCAAC TGAGCACAGC CAGAACTTAC
  AGACAAAATG AAGCAACTAT GACCCACACA ACATTCTTTC AAGGAGAAAC AAGTGGTGAG
  Y
  ACTGACCTCC TATCCAATAT GAAAAATGAC CTACAAAGAA AGGCTTTAAA TAACTTTCAC
  CAGGATTCCC TTATGGCCTC TCTGTTGTTC TAGGCTATTT TGCTTTAACA CTAGACTTTC
  TCTTTCAAAA CATTTTCTCC ATGTGTTAAG TCATTCGATG TGTTTGTATG TGTATAATAA
  AAGGAAGGTA AAATTTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51129226	NES13857139	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36912545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51129226	NES13857139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:58308522 () rs orientation: forward

Symbol	Name	Function Class
Gm42976	predicted gene 42976	1336 bp upstream