AGTATTAATA ATTCTCCTAA TAAATCTTTC TTAAAAGGAT CATCAGCCTC CGTGACCCCA GGCTGGAACC CGTCTACCAG TGAGCACCGA TCTCCAAGTG TTAGCAAGAG GAAATCTGCA AACACAGGCC TGGGCTGGAT GAGGAGGGAG GGTGTCTCTG TGCTCAGGAG AAAGACATAG GACACACAGG TCTTCAAGGC R GGTCTCTGCT ATATAGGGAG TAAATTACAA GATAGCCTGA GGCTATGAGA TCACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACAGAG GCACACACAC GGACTATTAC ATTTTTCTTT CTTTCTTTCT TTTTTTTTCC CCCTTTTTTT CGAGACAGGG TTTCTCTGTG TAGCTCTGGC TGTCCTAGAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51973417 | NES14990782 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs36914001 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51973417 | NES14990782 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr8:95971121 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cngb1 | cyclic nucleotide gated channel beta 1 | Intron | ||||||
Cpgi20868 | CpG island 20868 | 1990 bp distal | ||||||
Rr368590 | regulatory region 368590 | 834 bp upstream | ||||||
Rr668196 | regulatory region 668196 | 269 bp distal | ||||||
Rr668197 | regulatory region 668197 | 357 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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