rs36916082 SNP Detail

Summary

• ID
  rs36916082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87756147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCCTCGC TCTCTTTTTT
  AAAGATTTAC TTATTTAAAC ACACCAGAAG AAGGCATCAG ATCCCATTGC AGATGGTTGT
  GAGCCACCAT GTGGTTGCTG GGAATTGAAC TCGGGACCTC TGGAAGAGCA GTCAGTGCTC
  TTATCTCCAG CCGGATTCTC CTTTTCTCAA TCCTCTTCTC TCTCATTATC TCCAGCTTTC
  R
  ACTTCTAAAC TCTATTTCTT TAACTACCAT GTCTGTTGCT GCTGCGGCTC CCTCTCCATG
  CTACCCTGCA GATGAAGCCC AGGGTCTTTT AAGTAGGACC CCTGTCCCCT CGTCTTCACT
  TAGACTTGGT AGGCTTGCTT GGGGTGGAGG TGAGGGGTCC CTTAAGAGAG GAGACAGAAC
  CGAGGTCGCA AGAGTCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575801	NES14668787	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36916082					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575801	NES14668787	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87756147 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	1690 bp downstream
Rr579559	regulatory region 579559	1825 bp distal
Rr579560	regulatory region 579560	516 bp proximal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29835	transcription start site region 29835	1986 bp downstream
Tssr29836	transcription start site region 29836	1947 bp downstream
Tssr29837	transcription start site region 29837	1841 bp downstream
Tssr29838	transcription start site region 29838	1773 bp downstream
Tssr29839	transcription start site region 29839	1693 bp downstream
Tssr33960	transcription start site region 33960	1935 bp upstream
Tssr33961	transcription start site region 33961	265 bp downstream