rs36919870 SNP Detail

Summary

• ID
  rs36919870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7471404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGTGATGG TGATGATAAT GAAGTCACGA TGGTCTGTCC
  TTGTGAAGTC AAAGTCGAAG CGTTCGCGTC ATCATGTTAA TTCTTTCATA CCACCACCTG
  W
  AGTCCTGGCC AGCGAGGAAC ACCAGAGCCC AGCACGCGGG CCGGGTGGGG GCTCCCGGCG
  GGAACCGGGT GGCCAAAGCC CGGCCCTGGT CCCCGGGTTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50591928	NES13643618	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36919870					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591928	NES13643618	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7471404 () rs orientation: forward

Symbol	Name	Function Class
Atl3	atlastin GTPase 3	within coordinates
Cpgi10560	CpG island 10560	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543688	regulatory region 543688	1034 bp distal
Rr543689	regulatory region 543689	within coordinates
Rr543690	regulatory region 543690	100 bp proximal
Rr543691	regulatory region 543691	825 bp proximal
Rr543692	regulatory region 543692	882 bp proximal
Tssr154754	transcription start site region 154754	8 bp downstream
Tssr154755	transcription start site region 154755	within coordinates
Tssr154756	transcription start site region 154756	206 bp upstream
Tssr154757	transcription start site region 154757	388 bp upstream
Tssr154758	transcription start site region 154758	424 bp upstream
Tssr154759	transcription start site region 154759	464 bp upstream
Tssr154760	transcription start site region 154760	483 bp upstream