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rs36920462 SNP Detail
Summary
  • ID
    rs36920462
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44384861 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
               GGAAGCCACA GAAAGGTGGC ACCTGGCTCT GCTTCCTGAA GCTACACAGC
W
CTTCCACACC CACGGATACT GGGGGAGGAA CAGGCCTGGA CAGCAGCAAG           

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
A/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss50801818 NES13525193 PERLEGEN MM_PANEL2 f SNP T T T A T T T A T A A
SNP Consensus Information
SNP Consensus Type
A/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs36920462 SNP T T T A T T T A T A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50801818 NES13525193 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384861 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 733 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 583 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 691 bp proximal
Rr548236 regulatory region 548236 1954 bp distal
Rr548237 regulatory region 548237 1004 bp distal
Rr548238 regulatory region 548238 447 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 58 bp upstream
Tssr156606 transcription start site region 156606 within coordinates
Tssr156607 transcription start site region 156607 310 bp upstream
Tssr156608 transcription start site region 156608 719 bp upstream
Tssr156609 transcription start site region 156609 929 bp upstream
Tssr159446 transcription start site region 159446 1829 bp upstream
Tssr159447 transcription start site region 159447 1654 bp upstream
Tssr159448 transcription start site region 159448 1628 bp upstream
Tssr159449 transcription start site region 159449 1565 bp upstream
Tssr159450 transcription start site region 159450 1551 bp upstream
Tssr159451 transcription start site region 159451 1471 bp upstream
Tssr159452 transcription start site region 159452 1177 bp upstream
Tssr159453 transcription start site region 159453 1108 bp upstream
Tssr159454 transcription start site region 159454 1089 bp upstream
Tssr159455 transcription start site region 159455 783 bp upstream
Tssr159456 transcription start site region 159456 664 bp upstream
Tssr159457 transcription start site region 159457 635 bp upstream
Tssr159458 transcription start site region 159458 601 bp upstream
Tssr159459 transcription start site region 159459 509 bp upstream
Tssr159460 transcription start site region 159460 473 bp upstream
Tssr159461 transcription start site region 159461 412 bp upstream
Tssr159462 transcription start site region 159462 380 bp upstream
Tssr159463 transcription start site region 159463 341 bp upstream
Tssr159464 transcription start site region 159464 311 bp upstream
Tssr159465 transcription start site region 159465 291 bp upstream
Tssr159466 transcription start site region 159466 273 bp upstream
Tssr159467 transcription start site region 159467 209 bp upstream
Tssr159468 transcription start site region 159468 19 bp downstream
Tssr159469 transcription start site region 159469 89 bp downstream
Tssr159470 transcription start site region 159470 106 bp downstream
Tssr159471 transcription start site region 159471 123 bp downstream
Tssr159472 transcription start site region 159472 159 bp downstream
Tssr159473 transcription start site region 159473 178 bp downstream
Tssr159474 transcription start site region 159474 203 bp downstream
Tssr159475 transcription start site region 159475 248 bp downstream
Tssr159476 transcription start site region 159476 266 bp downstream
Tssr159477 transcription start site region 159477 286 bp downstream
Tssr159478 transcription start site region 159478 296 bp downstream
Tssr159479 transcription start site region 159479 320 bp downstream
Tssr159480 transcription start site region 159480 348 bp downstream
Tssr159481 transcription start site region 159481 397 bp downstream
Tssr159482 transcription start site region 159482 497 bp downstream
Tssr159483 transcription start site region 159483 588 bp downstream
Tssr159484 transcription start site region 159484 622 bp downstream
Tssr159485 transcription start site region 159485 748 bp downstream
Tssr159486 transcription start site region 159486 755 bp downstream
Tssr159487 transcription start site region 159487 836 bp downstream
Tssr159488 transcription start site region 159488 853 bp downstream
Tssr159489 transcription start site region 159489 907 bp downstream
Tssr159490 transcription start site region 159490 1009 bp downstream
Tssr159491 transcription start site region 159491 1044 bp downstream
Tssr159492 transcription start site region 159492 1095 bp downstream
Tssr159493 transcription start site region 159493 1121 bp downstream
Tssr159494 transcription start site region 159494 1141 bp downstream
Tssr159495 transcription start site region 159495 1259 bp downstream
Tssr159496 transcription start site region 159496 1329 bp downstream
Tssr159497 transcription start site region 159497 1342 bp downstream
Tssr159498 transcription start site region 159498 1354 bp downstream
Tssr159499 transcription start site region 159499 1384 bp downstream
Tssr159500 transcription start site region 159500 1415 bp downstream
Tssr159501 transcription start site region 159501 1430 bp downstream
Tssr159502 transcription start site region 159502 1466 bp downstream
Tssr159503 transcription start site region 159503 1479 bp downstream
Tssr159504 transcription start site region 159504 1558 bp downstream
Tssr159505 transcription start site region 159505 1671 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory