rs36920494 SNP Detail

Summary

• ID
  rs36920494
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86403998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGTGTA TTATAGTTCC
  GAGTGGTGCA GTCATGGATT GCAGAGGTGA CATGATGAGT GTAAGCACTT CAGTTGACTC
  ATGTTCACAA AGTGGATTTT TAAAATGCTC GGCCAAACCT AACAGGGTAT TAAATCTTTT
  CTTAATACTT AGTAAATATG TCCACATTGA TATGGAAAAC CCGTAAGCAT GCTTAACCCG
  M
  CTGAACAAAA CATAAAGCTA TAAATATATG TAGGCATTAG TATTGTTGCT TTGTTTTCTA
  AGCAACTTTA ATGGTCCAAG CTCAGCCCCA GAGTCTTCTA TGAGGGCATT GTAAATGGAG
  CATAAAGATA CCAATGAGAA AACCCTAAAC TTACATTTCC TTTTCTTTTT TAATGTTTAT
  TTATTTATTA TATGTAAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753421	NES14807100	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36920494					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753421	NES14807100	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86403998 () rs orientation: forward

Symbol	Name	Function Class
Gm44790	predicted gene 44790	within coordinates
Tia1	cytotoxic granule-associated RNA binding protein 1	within coordinates