rs3692147 SNP Detail

Summary

• ID
  rs3692147
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21882366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT CTGCCTGCAC AGGTCGAGTG
  S
  ACTACAAGGT CATTACACGT GTTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5068274	WI_WGS_14_16950009	WI	MOUSE	f	SNP			G		C
ss49166903	NES12506440	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C		G	G		G	G	G		G
ss324566730	CHEV_14_22651520	CHEVERUD	SCREENING_POP	f	SNP								C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3692147					SNP	G	C	G	C	C	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166903	NES12506440	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21882366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6221	CpG island 6221	154 bp distal
Rr296889	regulatory region 296889	within coordinates
Tssr124454	transcription start site region 124454	768 bp downstream
Tssr124455	transcription start site region 124455	724 bp downstream
Tssr124456	transcription start site region 124456	428 bp downstream
Tssr124457	transcription start site region 124457	584 bp upstream
Tssr127690	transcription start site region 127690	1169 bp upstream
Vdac2	voltage-dependent anion channel 2	within coordinates