rs36922015 SNP Detail

Summary

• ID
  rs36922015
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTAT AGATTCCTTG
  GGTCTCCTGT GATCAGGCCC AAGCACCTAC AGAATGCTCC TGCTCTCTGT CCCCCAGGTA
  ATCAAATATA GATTGGTTCC TTTTCATGAG GCACGGCTGT TGGGTCTTTG CTCCATTCTG
  AAACCACAAG AGTGCAGAAG CAGACAGGCA GATGCACAGT CAGCACTCAC TCTTTCCCCT
  K
  AAGAAGGCTA TGCAGGCCAT CTGTGGAGCT CTTCTCTAGA ACCCTGAGTG GGGGCTATTC
  CCAAAAGTGG AGGCTAACAG CATTTAACTG CTGTATCATG CAGCCAATCT TATATGAACA
  ATGCCTAGAT GCTTCTCTGT ACAAAGTCAA GGGCCCCTGA GTTCCCTCTG CCAGTTACTA
  ACTGGGATTC TACTCACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533215	NES14628252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36922015					SNP	G	G	G	G	G	G	G	G	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533215	NES14628252	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412885 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	Intron
Rr404213	regulatory region 404213	1237 bp upstream
Rr495436	regulatory region 495436	40 bp distal
Tssr4478	transcription start site region 4478	493 bp downstream
Tssr126621	transcription start site region 126621	467 bp downstream
Tssr126622	transcription start site region 126622	437 bp downstream
Tssr126623	transcription start site region 126623	1144 bp upstream
Tssr126624	transcription start site region 126624	1188 bp upstream
Tssr126625	transcription start site region 126625	1347 bp upstream
Tssr126626	transcription start site region 126626	1362 bp upstream
Tssr126627	transcription start site region 126627	1378 bp upstream
Tssr126628	transcription start site region 126628	1689 bp upstream
Tssr129768	transcription start site region 129768	638 bp upstream
Tssr129769	transcription start site region 129769	1135 bp downstream
Tssr129770	transcription start site region 129770	1204 bp downstream