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rs36923897 SNP Detail
Summary
  • ID
    rs36923897
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:135282268 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGTCCTCCT GTCTCCACTT
    CCCAAGTGCT GGGGTTTTCG GTGTGAGCCA CTGTGTCTGG CCTACAGACT GTCTGGCCTT
    CATCCCCTAC ACTAATATCT GGTTTCAGTT AGTGGACATT ATTCTCTCAA TGCCAGAGTA
    GATGCTGTGT GCCCATGCTG TGTGCTAGGC AGTCAGTAAC TAGTAATGTG TGCCTGGTGG
    S
    CCCAATCCAC TGGAAGAGAC AGAGAGGCTG AGAAAGGGGC TAATGCAAGG GAGAGAGGAA
    AGGCATCCGT AGGGCAGAGG TACAAGGGAA AGAGCCTGTC AGGGGTGACA TCTCCAAAAC
    AGGCCTTGGT TTAGGCTCCA CTGACTCTGG GTGATGGGCA GGCTCAGACC CAGTGAAGGT
    TCACTGGGAA ATGCCTGTGC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51380332 NES14468574 PERLEGEN MM_PANEL2 f SNP C C C C C C G C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36923897 SNP C C C C C C G C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51380332 NES14468574 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:135282268 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm56137 predicted gene, 56137 708 bp upstream
Lmod1 leiomodin 1 (smooth muscle) within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory