rs36926930 SNP Detail

Summary

• ID
  rs36926930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135146509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGTTGT CAATTTAAGT
  TGGCAAGAAC TAGAATTTTT TTCAGAAATA TTTTGCGAGT GGATCCACCT CTCCGGTGGT
  TTAGTCTCAT TTTCTTGCTC TAACTTCTAT CCCGCATTTT AAGATGGCGG CTGCTTTAAC
  TGGCTCGGGT TCTTTCCGGC ATCTCCTTTT CTAACTATTT AAGATAATGT TCTCTGTTAG
  Y
  GTTAAACGTT TTTTTATTCT GTTGTAGGGA GCTCTCACAG CCTCTGCCCC CAAGACTTAA
  CCTAAATTCA AACTCTCAGA CTAAGTTTCT GTGCGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTTTTGTATT TGGTTCTTTC ACAATCGAGA GGGTGGAGTA TTTACAGCTA
  ACTTGAAAAA AATGTTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51652673	NES14652413	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36926930					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652673	NES14652413	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135146509 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13855	CpG island 13855			1096 bp distal
Rr398041	regulatory region 398041			272 bp downstream
Rr585711	regulatory region 585711			1527 bp distal
Rr585712	regulatory region 585712			1382 bp distal
Rr585713	regulatory region 585713			881 bp distal
Rr585714	regulatory region 585714			120 bp proximal
Tssr1058	transcription start site region 1058			472 bp upstream
Tssr31817	transcription start site region 31817			1968 bp downstream
Tssr31818	transcription start site region 31818			1695 bp downstream
Tssr31819	transcription start site region 31819			1685 bp downstream
Tssr31820	transcription start site region 31820			1650 bp downstream
Tssr31821	transcription start site region 31821			1574 bp downstream
Tssr31822	transcription start site region 31822			1308 bp downstream
Tssr31823	transcription start site region 31823			1279 bp downstream
Tssr31824	transcription start site region 31824			1248 bp downstream
Tssr35785	transcription start site region 35785			372 bp upstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant