rs36927247 SNP Detail

Summary

• ID
  rs36927247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142944925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGAGAGG ATGGCTGGCT ATCGGCCGCG AACTTGGTGA
  CCTTTCCTGT GACCTCTAAG GGAGGAACTA GATGTCCCAG CAAGGATTCT AGGGACTTGT
  Y
  AGGACTGACC TTTGATGATG GGAAAGCCAT GCCATCTCCC CTTCCCCTTT GATGGTCGCT
  GGAGGGGTTT GCCTGGGACA GAGATGCGTT TGGACACAGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ
ss51533823	NES14872372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ
rs36927247					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533823	NES14872372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142944925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	819 bp proximal
Fscn1	fascin actin-bundling protein 1	1185 bp upstream
Rr378736	regulatory region 378736	1027 bp upstream
Rr624073	regulatory region 624073	1649 bp distal
Rr624074	regulatory region 624074	683 bp proximal
Tssr49613	transcription start site region 49613	1178 bp upstream
Tssr49614	transcription start site region 49614	1307 bp upstream
Tssr49615	transcription start site region 49615	1788 bp upstream
Tssr49616	transcription start site region 49616	1830 bp upstream