rs36927467 SNP Detail

Summary

• ID
  rs36927467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14015808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCAAGA CAAGGAACCG
  TGAGTTAAAG GTGACACACA GGTCATGCAG AGACGACTCC CTAGTATTCT GCTCCAGTCC
  CAGGAAGCTC TAAGTTGGTT TTCATAGAGC CCTCCTGGTC CTCAATTCAG GAAACCTGCA
  AACCTTCAAA CTTGATGTGA ATGAACACCA AAGTCGAGAT AGAGTCTACA AAAGAGCTTC
  K
  TTCTACAGCC TTCACTTCTG GTAATGTAAT ACATTTTAGA ATCTCATCTT AACACCAAGC
  CATTTCCAGG GACTCCCTTA CTTCTCATCT TTGCCCAACA TTGGCCTCAC TCCAGTTCTT
  ATTGGGATGC TGAACACAGA TGTTAGTGGT CATGTCTCAA TGTCTAGTGC TACACTGCTT
  AAGGAACCTT CTAGGACAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51988188	NES14998707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36927467					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51988188	NES14998707	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14015808 () rs orientation: forward

Symbol	Name	Function Class
1700019J19Rik	RIKEN cDNA 1700019J19 gene	within coordinates
Rr199406	regulatory region 199406	within coordinates
Rr199407	regulatory region 199407	1993 bp proximal