rs36927770 SNP Detail

Summary

• ID
  rs36927770
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11484627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTTATT TGTCCCATAG
  ACCGGAAGTT AATTGGTTTT ATCTAGTTGC ATGGCTCTGG GCCTCATTTT CAAATCTGTA
  GGAGCCAGAG AATCTGAGAC CCAGCATCAA TGATCATTGA TTCGTGACTC CCCCATTTCC
  TCTGCTACCT ACTTATCAAT GCAGAGCCAC ACAAACACAG GTCACTGAAC CGATGCCAAC
  K
  CAGTGATGGC AACGAGTATG GCTCAAATGT GACCACGACT GGTCTTTCTG CCCCGGAGTA
  AGGAGGAAGA GAGGCTGTGT GATGTCTACG TTGGATTTCC AGGGAGAGTG TATTCTCGAA
  TTTTCTATCC CACATGTTAT GCATTGAAGC AAATCACACA TTCCTTTGAG GGGTTGAAAA
  TGGCCCTACT GATCAAATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50960699	NES14422068	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36927770					SNP	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50960699	NES14422068	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11484627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4418	CpG island 4418	1863 bp proximal
Rr462902	regulatory region 462902	705 bp proximal
Rr462903	regulatory region 462903	1004 bp proximal
Rr462904	regulatory region 462904	1977 bp proximal
Tssr3791	transcription start site region 3791	1849 bp downstream
Tssr3792	transcription start site region 3792	1892 bp downstream
Tssr115745	transcription start site region 115745	1012 bp downstream
Tssr115746	transcription start site region 115746	1872 bp downstream
Tssr115747	transcription start site region 115747	1924 bp downstream
Tssr115748	transcription start site region 115748	1981 bp downstream
Vsnl1	visinin-like 1	within coordinates