rs36928504 SNP Detail

Summary

• ID
  rs36928504
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165155455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGTCCA TATTCCCCAT
  AGAAATGCCT CTGTTGCTGC ATCTTCATGA CGGTTCGTGG CCCAGCTGGA GAAAGTTTAT
  GTCTACCTCA GTGTCTGGTT CAGTCATTTC TTCTGGCAGG ATATTTAGGT CATAGAAAAT
  AACAGGAATA GTTAAGCTAC CTGCTAATTA GCCCAAAAGT AAACTGCTTT TAATGAAAAG
  M
  AGCTGGCATA GCAAATACAC TAAAAGCACC AACAGAGAGG GCCTGTGCTT GAGATGAGTG
  TGGCAGACTG TCAGATCTGC TCTGCCTTTC ATCGGTCAGG CAGCTCTGCA GGGTCTGGAA
  GCCGCTTCCA GCTGTGGTCC AGAGCTAGAG CTCAAGGCTA GCACTGAAGG TGATGGATGA
  GATACAACAT GGACCTACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51401434	NES14455688	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36928504					SNP	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51401434	NES14455688	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165155455 () rs orientation: forward

Symbol	Name	Function Class
Dcaf6	DDB1 and CUL4 associated factor 6	1614 bp downstream
Gpr161	G protein-coupled receptor 161	1141 bp downstream
Rr20301	regulatory region 20301	146 bp proximal
Rr25485	regulatory region 25485	131 bp distal
Rr25486	regulatory region 25486	1676 bp proximal
Tssr14767	transcription start site region 14767	1926 bp downstream