rs36929061 SNP Detail

Summary

• ID
  rs36929061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40692577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGC TTCCCTATTT GTGCAAACTC
  Y
  CTTTACAGGC CAATTCCATA GTAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52005357	NES15019246	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T		C	T	T	C		T
ss136338116	ENSMUSSNP6719440	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss322919576	CHEV_9_40589364	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36929061					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005357	NES15019246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40692577 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	970 bp proximal
Gm16096	predicted gene 16096	within coordinates
Tssr84467	transcription start site region 84467	916 bp downstream
Tssr84468	transcription start site region 84468	191 bp downstream
Tssr84469	transcription start site region 84469	104 bp downstream
Tssr84470	transcription start site region 84470	996 bp upstream
Tssr84471	transcription start site region 84471	1123 bp upstream
Tssr88968	transcription start site region 88968	1774 bp downstream