rs3692926 SNP Detail

Summary

• ID
  rs3692926
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18912484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGTCTGG AAGGGAGGTG
  GAGGAGGGCC ACTTAGAATC CCCCACCCCC GTGGGAGGAA GGACGGGAAA GGAAAATGAT
  GAGGGAGTCA TTTAAAACTG AATCAATAGA CGGAAGAGAA GGAAAAGAGC TAAATCTGAG
  GTGGGGCTAT AGAGGCAACA TAAAGTGGGA CCAGAGGACA GAAACTCCCT GTGGGGAAAG
  M
  GATCGGGTGT CATCTCTGTC CTGTAATCCC CATGTCGGCC GCCAGGGGTC ATAGAAGCTC
  TGTCCTTAGG GCTTCTTGGC GGGGCGAACC CGTTGGAGAG GAGAACGAGG GGAAGGGATG
  AACAGGACTG GACCTTTTGA GCTTGAAAAG TCTTGGATAC AGCGAGCGAA TGTTGGTACC
  CGTGACAGAA TATTGTCGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5069058	WI_WGS_7_14219470	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3692926					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18912484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	1749 bp distal
Cpgi18451	CpG island 18451	265 bp distal
Cpgi18452	CpG island 18452	398 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	1948 bp upstream
Rr155272	regulatory region 155272	within coordinates
Rr167138	regulatory region 167138	within coordinates
Tssr64794	transcription start site region 64794	1866 bp downstream
Tssr64795	transcription start site region 64795	320 bp downstream
Tssr64796	transcription start site region 64796	422 bp upstream