rs36929652 SNP Detail

Summary

• ID
  rs36929652
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGACGGC CATTGCAATA
  GAATTGTTCA GCTTAATGAT ATTAAAAAAA AAAAAAAAGC ACCCAATGAA GTCCCATACC
  TTCTGCAGCT TTTGATAGAA GTTGTCTATC TACTATGCTT CTGGGATTAA AAATGAGTAA
  ACCATAAATC CTACTGTTGG GAATCAGTCT GTTGAAAGCT CATACTAGTA TTAGCTGTGT
  W
  TATTCTGTAT TCAGCTGTGT GACGGGGGCT TTACATAATT TTTCCAGCTA CTGAAGATGG
  AGGCTTGGGT TTGAGAGGCT TGGTGAAGGT TTTGGATAGG GTTGGGTGGG GGTGGGGTCG
  TCGAGGCAAG GTCTCATGTA GCTCAGGCTA GCCTCAAGCT TACTGTGTGG CCAAAATGCT
  GGCCTGTAAC TCCTGATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss50418782	NES13463016	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	T	T	A	A	T		T	T	T
ss147246242	ENSMUSSNP3933607	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
ss325639831	CHEV_18_60686826	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs36929652					SNP	T	T	A	T	A	T	T	A	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418782	NES13463016	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	451 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	745 bp upstream
Gm58903	predicted gene, 58903	1250 bp downstream
Rr351670	regulatory region 351670	1547 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	938 bp downstream
Tssr153448	transcription start site region 153448	1186 bp upstream
Tssr153449	transcription start site region 153449	1093 bp upstream
Tssr153450	transcription start site region 153450	1069 bp upstream