rs3693071 SNP Detail

Summary

• ID
  rs3693071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58780225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC CTGATAGGCA TATCAGGTTA
  Y
  AAGTATAGGT ATAGGCATGG CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5069203	WI_WGS_19_58851004	WI	MOUSE	f	SNP	T			C
ss146567810	ENSMUSSNP2223975	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3693071					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58780225 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	1218 bp downstream
Gm56672	predicted gene, 56672	within coordinates
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	1001 bp downstream
Tssr159975	transcription start site region 159975	1024 bp downstream
Tssr159976	transcription start site region 159976	1475 bp downstream
Tssr159977	transcription start site region 159977	1484 bp downstream
Tssr159978	transcription start site region 159978	1507 bp downstream