rs36932939 SNP Detail

Summary

• ID
  rs36932939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22009259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAAATT AAGTCCTGTG
  CAATTAATCA TTATGAGACC ACGTAGGCCC AAAGATTAAA TCCAAAGAAA CTGTCAGTTC
  AGATTTCCTA AGTTTGGATT GTGAAAGACC ACGGGACTTT TTTCTTAACT CCCAATTGGG
  TGTGGGGCAA AATGTGAAGA TTTAAAGACC TTGGAAAACA AAAAACTCAT GCAGAAACTG
  R
  GTCACAGAAA GAACAAGAAC ATTAAACAGT TCTTTAACAG TCAACTTGAG CTGAAATAAC
  TGTGGCCAGA ATCCCTGAAA CGTTCCTCAG AAGCGCCAGG TAAGCGGCAT CTCTTCTGTG
  CAAGAGCCTC TGAGGTTCTT GTGCGGGTTA ATTATCTATT TCCAATCTCG GTGACTGTAA
  ATGGAGTCAG AGAGTTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51434224	NES14436542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36932939					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434224	NES14436542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22009259 () rs orientation: forward

Symbol	Name	Function Class
Gm31813	predicted gene, 31813	within coordinates
Rr397620	regulatory region 397620	1856 bp downstream
Rr397621	regulatory region 397621	1190 bp downstream
Rr574172	regulatory region 574172	1286 bp distal
Rr574173	regulatory region 574173	578 bp proximal
Tssr28574	transcription start site region 28574	1903 bp downstream
Tssr28575	transcription start site region 28575	7 bp downstream