rs36933189 SNP Detail

Summary

• ID
  rs36933189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27750964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATGTGCTT AAGGGCGACC TCTGTGGGTG TCAGGGCAGT
  TTGGGGTGGG ACAAGATCAG GGAAAGAGGC TGGCCTGGAG ATTAAGTTTA GTTGATCTCC
  Y
  TTGGAATAAG TGACGCCTGC ACACTTTTTT TTTTTTTAAC CTTTCCGGAG GCAGCCCTCT
  TTGCTTTGGA CACTCGCTCA TTAATGGAGG CTGGACGCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51947120	NES14964416	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36933189					SNP	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947120	NES14964416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27750964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	within coordinates
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	within coordinates
Rr186444	regulatory region 186444	within coordinates
Tssr76776	transcription start site region 76776	604 bp downstream
Tssr76777	transcription start site region 76777	566 bp downstream
Tssr76778	transcription start site region 76778	518 bp downstream
Tssr76779	transcription start site region 76779	474 bp downstream
Tssr76780	transcription start site region 76780	427 bp downstream
Tssr76781	transcription start site region 76781	487 bp upstream
Tssr76782	transcription start site region 76782	1810 bp upstream