rs36933802 SNP Detail

Summary

• ID
  rs36933802
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58780735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA CTGTTCTCAA CTGTCAGAGA
  K
  AAGGGCTCTT AGACATAGAA TTTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50903105	NES13490928	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	T		T	T		G	T	G		T
ss146567824	ENSMUSSNP3129300	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss325872829	CHEV_19_58866793	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36933802					SNP	T	T	T	T	G	T	T	T	T	T	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903105	NES13490928	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58780735 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	1728 bp downstream
Gm56672	predicted gene, 56672	within coordinates
Spmip5	sperm microtubule inner protein 5	within coordinates
Tssr159974	transcription start site region 159974	491 bp downstream
Tssr159975	transcription start site region 159975	514 bp downstream
Tssr159976	transcription start site region 159976	965 bp downstream
Tssr159977	transcription start site region 159977	974 bp downstream
Tssr159978	transcription start site region 159978	997 bp downstream