rs36934975 SNP Detail

Summary

• ID
  rs36934975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162536159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAATCT TCCATAGTAT
  CATTCTGATG ACAGATTATC TGGCTTAATT CTAAATGGAT TCCCAAAAGA ACTGGCTTAT
  TTACTTTTTG GCTAACTTAT GAAGAATCAA GTTATTATGA TAATAATAAA TAATAGGAAA
  ACTATAAAAA AAGAATAAAT ATATGAAGAT AAAATTTAAA TGTTGAAATA TTTGGCAAAG
  Y
  GAGAATACTA GTAACAGATT TTAACTAGAA TAATTGCCAT TTCAAAAATT TAAAGTTCTA
  AAGCAAAAAA GAGCTAGTAC TTTGGTCGAG TTAAATAGCT GCCACAAATG TCTACACTAA
  AAGCTTTTAA CTTCCTGATA AAGACCTAGG GGTCGTATTT TAAGTTCTTA CTAGATTAAT
  GCTGAGGGAA TTATGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51397216	NES14464322	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36934975					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397216	NES14464322	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162536159 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr9722	transcription start site region 9722	1755 bp upstream
Tssr14643	transcription start site region 14643	747 bp upstream
Tssr14644	transcription start site region 14644	998 bp downstream
Tssr14645	transcription start site region 14645	1826 bp downstream
Tssr14646	transcription start site region 14646	1868 bp downstream
Tssr14647	transcription start site region 14647	1912 bp downstream