rs36935282 SNP Detail

Summary

• ID
  rs36935282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGACTC AGGATAATGG
  GCTTGGCTTG TCAGCCCTGG TATCAAGCAG AAAAAGGGTA AGCAGAGTTA TAAAACCCTT
  GGATAATACC AGCAGTTGGG AGTATGGGTC TAGTGCCAGA AATAAAGGCA ACAAGTCAAG
  GGCAGGGGTA AAGGATTAGA GGAAGGAGAA GGCAATAGGC AGGAGGCACA AATGCCATGT
  Y
  GTGTAAAATG CTGGAAACCA AGAGTATCAT GTAGTACAAT TCAGTGAAAT CCCTAAGTAC
  AGGGTCTAGG GAGATGGCTC AGTAAGAGCA CTTCCTGTGC AAGCATGAGA ACCGGAGTTT
  GAATCTCCAG CATGCACATA AAAAAGCAGG CATGGCTGCC CAGGCCACTG ACCTCAGCAC
  TAGGAGAGGA AGACAAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674818	NES14008206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36935282					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674818	NES14008206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	951 bp distal
Gm48081	predicted gene, 48081	389 bp downstream
Rr676656	regulatory region 676656	1135 bp distal
Rr676657	regulatory region 676657	1030 bp distal
Rr676658	regulatory region 676658	811 bp distal
Rr676659	regulatory region 676659	310 bp distal
Rr676660	regulatory region 676660	481 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	1125 bp upstream
Tssr88821	transcription start site region 88821	1174 bp upstream
Tssr88822	transcription start site region 88822	1146 bp upstream
Tssr88823	transcription start site region 88823	1119 bp upstream
Tssr88824	transcription start site region 88824	1096 bp upstream
Tssr88825	transcription start site region 88825	1077 bp upstream
Tssr88826	transcription start site region 88826	985 bp upstream
Tssr88827	transcription start site region 88827	903 bp upstream
Tssr88828	transcription start site region 88828	873 bp upstream
Tssr88829	transcription start site region 88829	855 bp upstream
Tssr88830	transcription start site region 88830	827 bp upstream
Tssr88831	transcription start site region 88831	794 bp upstream