rs3693574 SNP Detail

Summary

• ID
  rs3693574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133739722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT GTGCAGCCTG CTTGGGCCAC
  R
  GGAAGATGAC ACTTAGGACA GTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5069710	WI_WGS_4_131583441	WI	MOUSE	f	SNP				G			A
ss37763057	NES09154985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	A		G	G	G	A		G
ss147514441	ENSMUSSNP2480473	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321344543	CHEV_4_133568326	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3693574					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763057	NES09154985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133739722 () rs orientation: forward

Symbol	Name	Function Class
Lin28a	lin-28 homolog A	within coordinates
Rr377233	regulatory region 377233	within coordinates
Tssr1330	transcription start site region 1330	21 bp downstream
Tssr43852	transcription start site region 43852	7 bp upstream
Tssr43853	transcription start site region 43853	within coordinates