rs36936999 SNP Detail

Summary

• ID
  rs36936999
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTATG GAACAGGGTA
  TTATTTAAGG AGGGTGTTGG AGTTTGGGAA GAGCAAGACA CTGTACTTTC CTCTTTCCAG
  TTTTCTCTTG GGGAAAAAAA AGTAGAAAAG GAAGTAGAAA GCATTCTTTT TTTTTTTATT
  ATTTGAAAGA AGCTGCCAGA TCTGAAAATC TAGCCTGTTA GAGACAAATA TTTTGTGATT
  M
  ACTTATAACA GTTTTGATAA ACTTAACACC AGTATCTTCA CTTTTTATTT TATTTCAAGG
  TTGAATAACT TAAGTTATTC AAGGTTAATT GGTTTGTTTT TTTGTTTGTT TGTTTGTTTT
  TTTGTTTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTCTT TGTGGGTTGG TTTTTTTTTT
  TTTTTTGGTT TTTCGAGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51516740	NES14634630	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C		A	C	C		C
ss324646626	CHEV_14_60061082	CHEVERUD	SCREENING_POP	f	SNP										A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36936999					SNP	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516740	NES14634630	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679694 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	914 bp distal
Gm45935	predicted gene, 45935	1365 bp upstream
Rr404137	regulatory region 404137	1187 bp downstream
Rr493049	regulatory region 493049	1381 bp distal
Rr493050	regulatory region 493050	1254 bp distal
Rr493051	regulatory region 493051	479 bp distal
Setdb2	SET domain, bifurcated 2	1365 bp upstream
Tssr125903	transcription start site region 125903	1663 bp downstream
Tssr125904	transcription start site region 125904	1249 bp downstream
Tssr129008	transcription start site region 129008	1358 bp upstream
Tssr129009	transcription start site region 129009	1148 bp upstream
Tssr129010	transcription start site region 129010	1137 bp upstream
Tssr129011	transcription start site region 129011	938 bp upstream
Tssr129012	transcription start site region 129012	935 bp upstream
Tssr129013	transcription start site region 129013	928 bp upstream