rs36937374 SNP Detail

Summary

• ID
  rs36937374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85808110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAACTCA CTTTGTAGAC CAGGCTGGCC TCGAACTCAG
  AAATCCGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCGTGCACCA CCACGCCCGG
  Y
  TGACTCACTC TTAAAAGGAC ACAGTAGTAT GTAATTTAGA ATATAAGGTC TTTATTTGAT
  AGATGTTGCA TTCAGATTCC AGGCTTTTGA CCCCCTTTTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51034543	NES14384629	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36937374					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034543	NES14384629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85808110 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Gm40478	predicted gene, 40478	1879 bp upstream
Rr261858	regulatory region 261858	1110 bp distal
Rr261859	regulatory region 261859	110 bp distal
Rr261860	regulatory region 261860	91 bp proximal
Rr261861	regulatory region 261861	1491 bp proximal
Rr264621	regulatory region 264621	440 bp distal
Rr268750	regulatory region 268750	1711 bp distal
Tssr114432	transcription start site region 114432	1799 bp downstream
Tssr117101	transcription start site region 117101	1875 bp upstream