rs36938782 SNP Detail

Summary

• ID
  rs36938782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACAGCG CAGATCAAAG
  AGGGGCCTGG AGCTCTGAGA AGAGAAGGAG ACTCATCCGT GTTGAGTTTC CACAAGTACT
  GTCTTGAGTT TTGCAATAAA AGTGGGATAG CAGAGTTGAG TGAGCCGTAG GCTGAGTTCT
  CTCTTTTGTC TCCTAAGTTT TTATGACTAC AAAAATCAGT AGTATGTCCT GAAATAATCA
  Y
  TAAGCTGTTT GAAAGTATGA CTGCTTGCCA TGTAGATACC ATGGCTTGCT GAATAATCAG
  AAGAGGTGTG ACTCTTATTC TAAAATTTGT CACAAAATGT CAAAATGAGA GACTCTGTAG
  GAACGAGTCC TTGACAGACA GCTCAAGGGG TTTTTTTCCT TTGTCTCATT TCTACATGAA
  AGTAAATTTG AAATGATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676704	NES14820425	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36938782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676704	NES14820425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701529 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1901 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1890 bp upstream
Igkj1	immunoglobulin kappa joining 1	1946 bp downstream
Igkj2	immunoglobulin kappa joining 2	1591 bp downstream
Igkj3	immunoglobulin kappa joining 3	1285 bp downstream
Igkj4	immunoglobulin kappa joining 4	960 bp downstream
Igkj5	immunoglobulin kappa joining 5	622 bp downstream
Rr158	regulatory region 158	1406 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	590 bp upstream
Rr399685	regulatory region 399685	1002 bp upstream
Rr399686	regulatory region 399686	1966 bp upstream
Tssr56950	transcription start site region 56950	2000 bp downstream
Tssr56951	transcription start site region 56951	1974 bp downstream
Tssr56952	transcription start site region 56952	1694 bp downstream
Tssr56953	transcription start site region 56953	998 bp downstream
Tssr56954	transcription start site region 56954	866 bp downstream
Tssr56955	transcription start site region 56955	645 bp downstream
Tssr56956	transcription start site region 56956	1263 bp upstream
Tssr56957	transcription start site region 56957	1885 bp upstream
Tssr56958	transcription start site region 56958	1932 bp upstream
Tssr56959	transcription start site region 56959	1950 bp upstream
Tssr56960	transcription start site region 56960	1973 bp upstream
Tssr56961	transcription start site region 56961	1987 bp upstream
Tssr56962	transcription start site region 56962	1995 bp upstream
Tssr61321	transcription start site region 61321	1937 bp downstream