rs3693915 SNP Detail

Summary

• ID
  rs3693915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105280035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAATAGA ATGACCAGGC
  ACAGAAAGAC AAATGCCACA AGATCCAACT CACATACAAA TCTTAAAAAG TTGAATAGAA
  ATAACACAGG GCTGATTACC GGTGGCACAT CAAAAGATAA TAGAGAAAAA TCTATAAAAT
  AAAGTTAACA GAAAGCCTGA AACACTGAGA AGAAAAATTG GCTTTCTACT CATTAATATG
  R
  ATAACAGCAT TGTTAGCTAT GGAAGAAAAA GTATGAGAAA CAAAATCAAA ATTAGACAAG
  TAGGACAGAA CCTGACTAAC ACGTTTCTCT CCAGAAAACA AAATATCCAA TCAAAAATAC
  AAAACAGAAC AGGAGAGTAA TGTTTCAAAC CAAATGTCTT CCAGGGGACA TTTAAAACAT
  AAAGCTAGCA TGCAACCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5070058	WI_WGS_5_102770303	WI	MOUSE	f	SNP		A	G
ss45735869	mCV23375035	ABI	CRAMUS_MOUSE	f	SNP	A		G	G
ss148988981	ENSMUSSNP1212629	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3693915					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105280035 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	383 bp upstream
Tssr52267	transcription start site region 52267	837 bp upstream
Tssr52268	transcription start site region 52268	783 bp upstream
Tssr52269	transcription start site region 52269	708 bp upstream
Tssr52270	transcription start site region 52270	546 bp upstream
Tssr52271	transcription start site region 52271	428 bp upstream
Tssr52272	transcription start site region 52272	365 bp upstream
Tssr52273	transcription start site region 52273	287 bp upstream
Tssr52274	transcription start site region 52274	256 bp upstream
Tssr52275	transcription start site region 52275	231 bp upstream
Tssr52276	transcription start site region 52276	197 bp upstream
Tssr52277	transcription start site region 52277	181 bp upstream
Tssr52278	transcription start site region 52278	154 bp upstream
Tssr52279	transcription start site region 52279	92 bp upstream
Tssr52280	transcription start site region 52280	41 bp upstream
Tssr52281	transcription start site region 52281	10 bp upstream
Tssr52282	transcription start site region 52282	2 bp downstream
Tssr52283	transcription start site region 52283	80 bp downstream
Tssr52284	transcription start site region 52284	139 bp downstream
Tssr52285	transcription start site region 52285	173 bp downstream
Tssr52286	transcription start site region 52286	186 bp downstream
Tssr52287	transcription start site region 52287	215 bp downstream
Tssr52288	transcription start site region 52288	232 bp downstream
Tssr52289	transcription start site region 52289	312 bp downstream
Tssr52290	transcription start site region 52290	419 bp downstream
Tssr52291	transcription start site region 52291	759 bp downstream
Tssr52292	transcription start site region 52292	1238 bp downstream
Tssr52293	transcription start site region 52293	1408 bp downstream
Tssr52294	transcription start site region 52294	1505 bp downstream
Tssr52295	transcription start site region 52295	1823 bp downstream