rs36939166 SNP Detail

Summary

• ID
  rs36939166
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73100945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAACCAT GGGAGGAGGC
  TGGGGGGGGG TCCTCTAGAG ACCCCCGTGC TCATGTGACA ATTTTGGAGG TCCAATCAGG
  CTACAGTGGC CAGAGAGATC ATAAAGGCAG GTCAGGTGGG GCACAGGCAG CCAGCATGGG
  AGGTGATGTC CGATGATGCT TTCCTGGTCT CTGAGGCTGG GATCGTCACT GTACTGCATC
  M
  AGGTACGAAA GCTCGGGTTG TTAGTAAGGT TGACCGCACT ACAGAGATCT AGTCTGACAA
  GCAGCTTCTG GAACATGCTG CTTACATTCT TTCAGACCTC CATGCTGCCA CCTTCCTACA
  ACAGCTGGGA CTTGAACCTA GGTCTGCGCT TGCGCTAGGT AAGGGCTCTA TCATTGAGTT
  ATAACCCCGG CCCTCTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50745832	NES14235175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36939166					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50745832	NES14235175	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73100945 () rs orientation: forward

Symbol	Name	Function Class
Gm27211	predicted gene 27211	within coordinates
Rr682926	regulatory region 682926	1144 bp distal
Rr682927	regulatory region 682927	783 bp distal
Tssr86094	transcription start site region 86094	1205 bp downstream
Tssr86095	transcription start site region 86095	1194 bp downstream
Tssr86096	transcription start site region 86096	1178 bp downstream
Tssr86097	transcription start site region 86097	1149 bp downstream