rs36940277 SNP Detail

Summary

• ID
  rs36940277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:116590553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTGAAA ATCTAATTGT
  ACAATTCTTT GATGGTCTCT GCATGGAAAT CCTACAGATA AACCCTTACT CTTTCTTGTT
  TTCTGACACA CACACACATG TGTATACATA TACATATATG TATATTTGAG CAAAGTATAT
  CTTGCAGAAA CATGTGTTGA ATAAATAAAT ACATATGAGG GATAGGAACA GGTTGTCATC
  Y
  GATGCACCAC ATTTGCTCCT ATAAGGGAAG GAAGACAGAT GGGTCAAGGA CACAAGAAAA
  CCCACAGAAC CAACTAACTT GAGCTCATAG GGGCTCACAG AGACTGAAGT GGCAACCATG
  TAGGGGGTCT GGATGGGTCT GACCTAGGCC CTTTGCATAT ATGTTAAGTT GTGCCCTTTG
  TCTTGTAGAA CTCCTAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ
ss51925353	NES14938183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ
rs36940277					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51925353	NES14938183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:116590553 () rs orientation: forward

Symbol	Name	Function Class
Rr159555	regulatory region 159555	1848 bp proximal
Rr381374	regulatory region 381374	within coordinates