rs3694058 SNP Detail

Summary

• ID
  rs3694058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105280117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAGGGC TGATTACCGG
  TGGCACATCA AAAGATAATA GAGAAAAATC TATAAAATAA AGTTAACAGA AAGCCTGAAA
  CACTGAGAAG AAAAATTGGC TTTCTACTCA TTAATATGGA TAACAGCATT GTTAGCTATG
  GAAGAAAAAG TATGAGAAAC AAAATCAAAA TTAGACAAGT AGGACAGAAC CTGACTAACA
  Y
  GTTTCTCTCC AGAAAACAAA ATATCCAATC AAAAATACAA AACAGAACAG GAGAGTAATG
  TTTCAAACCA AATGTCTTCC AGGGGACATT TAAAACATAA AGCTAGCATG CAACCCAACA
  ACACCACCAA TCCAATAAGC CCAGCAAATA TGAGGAAGAA CTTGAACATA TGTTTCTGAA
  ATGAAAGCAC ACAGTGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5070201	WI_WGS_5_102770385	WI	MOUSE	f	SNP		T	C
ss45759236	mCV23375045	ABI	CRAMUS_MOUSE	f	SNP	T		C	C
ss148988987	ENSMUSSNP6848704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3694058					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105280117 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	465 bp upstream
Tssr52267	transcription start site region 52267	919 bp upstream
Tssr52268	transcription start site region 52268	865 bp upstream
Tssr52269	transcription start site region 52269	790 bp upstream
Tssr52270	transcription start site region 52270	628 bp upstream
Tssr52271	transcription start site region 52271	510 bp upstream
Tssr52272	transcription start site region 52272	447 bp upstream
Tssr52273	transcription start site region 52273	369 bp upstream
Tssr52274	transcription start site region 52274	338 bp upstream
Tssr52275	transcription start site region 52275	313 bp upstream
Tssr52276	transcription start site region 52276	279 bp upstream
Tssr52277	transcription start site region 52277	263 bp upstream
Tssr52278	transcription start site region 52278	236 bp upstream
Tssr52279	transcription start site region 52279	174 bp upstream
Tssr52280	transcription start site region 52280	123 bp upstream
Tssr52281	transcription start site region 52281	92 bp upstream
Tssr52282	transcription start site region 52282	75 bp upstream
Tssr52283	transcription start site region 52283	within coordinates
Tssr52284	transcription start site region 52284	57 bp downstream
Tssr52285	transcription start site region 52285	91 bp downstream
Tssr52286	transcription start site region 52286	104 bp downstream
Tssr52287	transcription start site region 52287	133 bp downstream
Tssr52288	transcription start site region 52288	150 bp downstream
Tssr52289	transcription start site region 52289	230 bp downstream
Tssr52290	transcription start site region 52290	337 bp downstream
Tssr52291	transcription start site region 52291	677 bp downstream
Tssr52292	transcription start site region 52292	1156 bp downstream
Tssr52293	transcription start site region 52293	1326 bp downstream
Tssr52294	transcription start site region 52294	1423 bp downstream
Tssr52295	transcription start site region 52295	1741 bp downstream