rs36941679 SNP Detail

Summary

• ID
  rs36941679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAATTTA TTCCTTTATA
  GAATGTTTTA AATTGTAAAA TAGTTAATCC ACATTTCTTA CTAAAAGTTG GAACTAACCA
  GGGAGAAGCC TAGCATAGAA GGAAAAGTCC CCATGTTCTC TCTTCCCCAG TTCATCCTGG
  CGTTGCTGGC CACGTCTCTG CGCAGATCAT TCTCTATGCA CCTGGCGTTG CTGGCCACGT
  Y
  TCTGCGCAGA TCATTCTCTA TGCATTTACA AACATCCTAT GTGGTCTGTC ATTTTGGATG
  TTATGTAAAT GGGTTCACAT CATGTGCTGT GTTCTTTGCC CCTCTTTGCT AAATAACCAC
  AGAAAGCTTT CAGTTACTGT GCATGGAAAT CTCTCACACC TGACCGGGTG TCGCACAGTG
  TCACAGGGTG TACTGATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51658458	NES14824140	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36941679					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658458	NES14824140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025441 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56341	transcription start site region 56341	1786 bp downstream
Tssr56342	transcription start site region 56342	1754 bp downstream
Tssr56343	transcription start site region 56343	1208 bp downstream
Tssr56344	transcription start site region 56344	1184 bp downstream
Tssr56345	transcription start site region 56345	1165 bp downstream
Tssr56346	transcription start site region 56346	1112 bp downstream
Tssr56347	transcription start site region 56347	1094 bp downstream
Tssr56348	transcription start site region 56348	1071 bp downstream
Tssr56349	transcription start site region 56349	750 bp downstream
Tssr56350	transcription start site region 56350	721 bp downstream
Tssr56351	transcription start site region 56351	694 bp downstream
Tssr56352	transcription start site region 56352	675 bp downstream
Tssr56353	transcription start site region 56353	607 bp downstream
Tssr56354	transcription start site region 56354	593 bp downstream
Tssr56355	transcription start site region 56355	569 bp downstream
Tssr56356	transcription start site region 56356	551 bp downstream
Tssr56357	transcription start site region 56357	539 bp downstream
Tssr56358	transcription start site region 56358	521 bp downstream
Tssr56359	transcription start site region 56359	490 bp downstream
Tssr56360	transcription start site region 56360	443 bp downstream
Tssr56361	transcription start site region 56361	1375 bp upstream
Tssr56362	transcription start site region 56362	1603 bp upstream
Tssr56363	transcription start site region 56363	1890 bp upstream
Tssr60849	transcription start site region 60849	1145 bp upstream
Tssr60850	transcription start site region 60850	1092 bp upstream
Tssr60851	transcription start site region 60851	630 bp upstream
Tssr60852	transcription start site region 60852	601 bp upstream
Tssr60853	transcription start site region 60853	589 bp upstream
Tssr60854	transcription start site region 60854	572 bp upstream
Tssr60855	transcription start site region 60855	527 bp upstream
Tssr60856	transcription start site region 60856	500 bp upstream
Tssr60857	transcription start site region 60857	399 bp upstream
Tssr60858	transcription start site region 60858	1932 bp downstream
Tssr60859	transcription start site region 60859	1974 bp downstream
Tssr60860	transcription start site region 60860	1988 bp downstream