rs36941707 SNP Detail

Summary

• ID
  rs36941707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19280431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCGGGCG AGGGGAAGCG
  GCCCGGCTGG GGACAGATGA GGGATCCCGC GCCACAACCC GGGAGCTGGG GAGCTGAGCT
  CAAGAGGAAA GGAAAGTAAG GCTCAAGGGG ACGTCGAGAG AGGGAAGGCA GACTCCGAAG
  CTCCAAGATA TCTGAGGATC GGGATTAAAA AAAAAAAAAA AAAAAAAAAG CGAAAGGGGT
  Y
  TAGCGAAGAG GGAAGCAGAG GCGGGGGAAG AAAAGTTGGA AAGCTACCCG CAGCAGCACA
  GCAGCACGAG GCTGGGCCAC CGGGCAGAGG TGGACAACCC AGACTCAGTA ACCGGTTCTG
  AAAGAAATCT GAACCGTGAG CCTTGTAGGT GTTGGGACAG CACCGCGGTG TTAGCCTTGC
  TCAGCTAAGA AGAGTCCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916950	NES13479773	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36941707					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916950	NES13479773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19280431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	within coordinates
Rr408238	regulatory region 408238	1237 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1357 bp proximal
Rr408241	regulatory region 408241	1858 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	1240 bp downstream
Tssr6031	transcription start site region 6031	1213 bp downstream
Tssr6032	transcription start site region 6032	1196 bp downstream
Tssr6033	transcription start site region 6033	1174 bp downstream
Tssr6034	transcription start site region 6034	1154 bp downstream
Tssr6035	transcription start site region 6035	1118 bp downstream
Tssr6036	transcription start site region 6036	1106 bp downstream
Tssr6037	transcription start site region 6037	1081 bp downstream
Tssr6038	transcription start site region 6038	1054 bp downstream
Tssr6039	transcription start site region 6039	1030 bp downstream
Tssr6040	transcription start site region 6040	1897 bp upstream