rs3694197 SNP Detail

Summary

• ID
  rs3694197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43861489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TATCATGTCC ACACGGGATA
  M
  AAGAGAGTAG AAAAACTGTA GGTCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss5070342	WI_WGS_18_43887294	WI	MOUSE	f	SNP				A	C
ss39610598	mCV24080459	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		C	A
ss147020889	ENSMUSSNP819619	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A		C
ss325601068	CHEV_18_43888078	CHEVERUD	SCREENING_POP	f	SNP							A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3694197					SNP	A	A	A	A	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43861489 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	889 bp distal
Rr356243	regulatory region 356243	1021 bp distal
Spink1	serine peptidase inhibitor, Kazal type 1	within coordinates