rs36943524 SNP Detail

Summary

• ID
  rs36943524
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117302677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAATCGC AGGTCTCCAT
  GCTTACACAA CAAGCACTTT GCCCATGGGG CTGAGTCCAC ACAGCCTCTT GGTGCTATTT
  GCCTATGGGT TTCATGACCA AGTTTGCAAA CCATTTTTTG ACGCGGCCCC ATGGATGATG
  AACAGAGTCA TTTTCATGAC CTGTCAGGAA GAATAACCAA ACCCAAGGGT CCCTATGAAC
  W
  CAGAAGGAGG TGATGAGCTG ATCTCATAAT GGTCGTTGGA GTCGTTGGAG TCCCCACAGG
  ATGCTCTTTT AGGCTCAGCT GTTAACAGTG GTGGTCACTG CAGTCCAGGG TAACAAGGAC
  CATTAGCAGT CACCACCATA AGAATGGTTG CAGCCTGTAA CAATCGTGGC AGTGAATAAT
  AACTGTGTAA ATTGGAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51979459	NES14997555	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36943524					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51979459	NES14997555	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117302677 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	within coordinates
Tssr83068	transcription start site region 83068	1973 bp upstream