rs36944424 SNP Detail

Summary

• ID
  rs36944424
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAGTGA GTGCTGCAAA
  GGAGGCCTGG TGTGTAGGGA CTGGGGGTCA CCTTCTTTCA AGGGACTCTA CAAGGTCCAC
  TAGAGACACT ATACAGCAAG GAGCAGACCT GACCCAGGGC TCCACTGATT TTGAACTATT
  TATTGGGAGT TGGGATTCTG AGTCAAGGCC ACTGACCCAG GTCCATGAGG AAGTGTTCGA
  K
  GTCTTCGTAG AGACTGTTGG TGCTAGACAA GCACAAGCCG AGACTGCTGC TGTCCAGGGA
  GGACACACCC TCACGCTGCA CGCCCTCCAG GTATGCCTTG CATACCCATG GCTCCAGCTG
  TGGAAAGGAC ATGTGTTAAG ACTCTTTCTT ACCTAGCAGC CCACACCTTC CCTTGGCCCA
  CCCAGGCTCT ACCTTCACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51935592	NES14951791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36944424					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51935592	NES14951791	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843176 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	513 bp downstream
Rr154683	regulatory region 154683	1825 bp proximal
Rr166948	regulatory region 166948	1624 bp proximal
Tssr69941	transcription start site region 69941	65 bp downstream
Tssr75604	transcription start site region 75604	262 bp downstream
Tssr75605	transcription start site region 75605	420 bp downstream
Tssr75606	transcription start site region 75606	558 bp downstream
Tssr75607	transcription start site region 75607	634 bp downstream
Tssr75608	transcription start site region 75608	691 bp downstream
Tssr75609	transcription start site region 75609	709 bp downstream
Tssr75610	transcription start site region 75610	734 bp downstream
Tssr75611	transcription start site region 75611	990 bp downstream
Tssr75612	transcription start site region 75612	1252 bp downstream
Tssr75613	transcription start site region 75613	1980 bp downstream