rs3694533 SNP Detail

Summary

• ID
  rs3694533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:4020321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACATAAA GTGAGTTTAT
  TGTGGATTGT TGTAGTTTCC CCAGCCTTGA AGCAGGCTGA TTCAGACCTC CAGGCCACTG
  AGTATGAGAT CACCTGGGGT GGAGCCTTCT GACTTACATG GCTCTATTGT TCTGTCACCT
  GCTGCTGCTC TTCTCCAAGA CACTGCTACC TGCTGAGAGG CTCTTGAGAC ATTCCAGAGA
  Y
  AGCATCTGGC AGATCGCCTA CAGGCTGGTA ACTGGCACCT AGAATGGATC AGCAAGGGAT
  GGGCCTCCAT TCTTTATAAG CACAGACTCA TAGTAAACTC TGGGGCTTTG AACAGAAACA
  AGTCTTGGCC TCCATTATTT CTTTCGATGT TTCCTTCCAT ACAGCCCCAG CTTCTCACTC
  AGGAACTCAA TTAGCTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5070680	WI_WGS_9_3938578	WI	MOUSE	f	SNP	C		T
ss45555256	mCV23390192	ABI	CRAMUS_MOUSE	r	SNP	G	A		A
ss136174991	ENSMUSSNP184089	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs3694533					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:4020321 () rs orientation: forward

Symbol	Name	Function Class
Rr382823	regulatory region 382823	within coordinates