rs3694565 SNP Detail

Summary

• ID
  rs3694565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5935705 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACAGT GACACGCAAA GCGATGGGTG
  S
  AAACTGCTTC GCACTCTAGA CATTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5070712	WI_WGS_17_3335010	WI	MOUSE	f	SNP	C							G
ss39581130	mCV23634251	ABI	CRAMUS_MOUSE	r	SNP	G	G	C					C		C
ss60525987	NES16545868	PERLEGEN	MM_PANEL2	r	SNP	G		C	C	C	C	C		C	C	C	C	C	C	C	C	G
ss134539805	ENSMUSSNP6092470	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3694565					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525987	NES16545868	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5935705 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8563	CpG island 8563	1574 bp proximal
Rr332307	regulatory region 332307	96 bp proximal
Rr342320	regulatory region 342320	within coordinates
Rr370166	regulatory region 370166	169 bp upstream
Snx9	sorting nexin 9	within coordinates