rs36946100 SNP Detail

Summary

• ID
  rs36946100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8998513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTAGCC TGGCGCTAAC
  CTCATGTCCT ACTACTAGTA GGGGCTTTGC TTACATCTAA CTTTGTGAAG ACCTCTGACT
  CATTCAGTTG TGGAAAATGC ATATTTTGGC ACTCATTTTA GAGTCCAAAG AGATCTGGAA
  CAGACAGTGT GGCATTTGAC TTGATGGACA CCTAAACGCC ACACCTCACC AGGCTTTCCA
  Y
  GAATAATCTT TAAAAGCATT TCAGATTGAC TACTCAGCCA GACGATTGAT ACAAATAGAC
  CAACTACTAC TCTATCCCCT TGATAAGGAC AACAGAAGAC ACTAGTGGGA AAGGCTGTGA
  GCTGATGACA CCAGCATCAC CCTGCCCCTC CCCCAGGCTA AGAACTTTCC AAACGCATCT
  AACTCCTTGC AGCCTGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51571786	NES14613469	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36946100					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51571786	NES14613469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8998513 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3l	RAN binding protein 3-like	within coordinates
Rr499127	regulatory region 499127	1017 bp distal
Tssr130603	transcription start site region 130603	1093 bp downstream
Tssr130604	transcription start site region 130604	1069 bp downstream
Tssr130605	transcription start site region 130605	1047 bp downstream
Tssr130606	transcription start site region 130606	1018 bp downstream
Tssr130607	transcription start site region 130607	736 bp downstream
Tssr130608	transcription start site region 130608	661 bp downstream
Tssr130609	transcription start site region 130609	637 bp downstream