rs3694705 SNP Detail

Summary

• ID
  rs3694705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:5935629 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGAG TGTGTGCCCT TCAAAGCTCA
  Y
  GTTCAGCCAT CACCCCGGGT CCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss5070853	WI_WGS_17_3335086	WI	MOUSE	f	SNP	C					T
ss39573224	mCV23634250	ABI	CRAMUS_MOUSE	r	SNP	G	G	A			A	A
ss60525988	NES16545865	PERLEGEN	MM_PANEL2	r	SNP	G		A	A	A		A	A	A	A	G
ss134539802	ENSMUSSNP1743979	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs3694705					SNP	C	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525988	NES16545865	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5935629 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370166	regulatory region 370166			245 bp upstream
Rr521235	regulatory region 521235			1899 bp distal
Rr521236	regulatory region 521236			within coordinates
Rr521237	regulatory region 521237			1555 bp proximal
Snx9	sorting nexin 9			Intron
				Noncoding-Transcript-Variant