rs36947817 SNP Detail

Summary

• ID
  rs36947817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGACGTCA GAGGGCCGTC
  AGGCAGGAAG TGGCTGGTTT TAGCTCTCTA GGCGGGTGAG GCCGCAGGAG CTGCTCTGTT
  CTCGCGACAT TTGCAGGGAC GATGTGGGAG TGTCTCGGTG TTGTGGTGTA GGAGGGTGTG
  CTGAAGTAGA GTTCAGGCGT CCGTAGCCCT CTCATCGTTT TAATTAATAT GTGTATATTG
  Y
  ATATTAGTAT GGTGTACAGG GTGAGTCGCA GGACAGTCAG GGCTACACAA AGAAACCCTG
  TCTTGAAAAA CAGAACAACA AAAATCTTGT TATACTTATT TATTTTGATA TTTTGAGACA
  AGGTCTCATG TAGTGCAGTT GGTCCTCCTG CCTCCCCGTC CCAAGTGGTG AGCCTACAAT
  GTGTGTTCCA GCATGCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354495	NES13746146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36947817					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354495	NES13746146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	within coordinates
Dguok	deoxyguanosine kinase	259 bp upstream
Rr399724	regulatory region 399724	within coordinates
Rr632884	regulatory region 632884	1307 bp distal
Rr632885	regulatory region 632885	within coordinates
Tssr1908	transcription start site region 1908	58 bp downstream
Tssr61663	transcription start site region 61663	904 bp upstream
Tssr61664	transcription start site region 61664	341 bp upstream
Tssr61665	transcription start site region 61665	329 bp upstream
Tssr61666	transcription start site region 61666	314 bp upstream
Tssr61667	transcription start site region 61667	288 bp upstream
Tssr61668	transcription start site region 61668	270 bp upstream
Tssr61669	transcription start site region 61669	237 bp upstream