rs36948574 SNP Detail

Summary

• ID
  rs36948574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80597688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACACACA GCACCCAGCA
  GAACCCAGCC ATGACAACCA CCCAACACTG CATGACCCCC AGACTCGGAA CCCTGGTAAT
  GAGTCCTGGG AAACCCCGTG TTCTCACGCA GGAGGCCACT CTCCCGTCCT CCCACATCTC
  TCCACCCTCC CCGGGTCCTT TCAGAGTAGG AAGGACTTGC ACTTCAAAGT CACATGGGTC
  R
  TTCTCAAGGA TGCTTCTCCT TAGCCCTCAG AGAACCGTTT GTGGAACTCG TGAGGGATGA
  CAAAGACTAT GACAAACCTG GCTTACCCTC AGGTCCCGAG GGAACACAGA CACTTTTTGG
  CACTCTGGCC ACAGACTCAG AGCTTTCCGC ATGCCTGGCT TACCCTGAAA AGCCCTTGCC
  TCTCCAGGAG CGTGACCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50521922	NES13678037	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36948574					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50521922	NES13678037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80597688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	420 bp proximal
Gm54039	predicted gene, 54039	within coordinates
Tssr152111	transcription start site region 152111	717 bp upstream
Tssr152112	transcription start site region 152112	754 bp upstream
Tssr154031	transcription start site region 154031	307 bp downstream