rs36948834 SNP Detail

Summary

• ID
  rs36948834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64977718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGATGCA CAGTGTAGGT
  TAAACAGTGT AGGAGAACCC TGAGGATATT ACCAAATTGG CACGTGTCTG AATTCCCACG
  TCTCTGAGGT CCGTGCCACG GAGAGAAAAA CCCAGCGGCG GCAGCAGTGG CAGGGTGTCC
  TCACTCTGCT TGCTGTTCAG CTGCCAGGAT CTGTGGGCCT TAAAATCTAG GTCAGTGGGA
  R
  GTCTTGGAGG AACAGGGCTG AGATGAGGAA GGTGCCGCAT CGCGTGCTGC TGCCCTCTGT
  CCCATCTGTT TCATGGAGTC TTGCCTCCCA CCAGAGCTGT GCCCTTTGGA GAAATAAAAC
  ACAGAAAGCT TCTCCCTGGA GTTAATTATC GAGATCCTCT TTGTACAGTG TCTGTGAGCC
  TTGCTCTCTT AATAACCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142148	NES13844335	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36948834					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142148	NES13844335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64977718 () rs orientation: forward

Symbol	Name	Function Class
Gm31684	predicted gene, 31684	625 bp downstream
Klf3	Kruppel-like transcription factor 3 (basic)	within coordinates
Rr612115	regulatory region 612115	499 bp distal
Tssr46420	transcription start site region 46420	580 bp upstream
Tssr46421	transcription start site region 46421	1540 bp upstream
Tssr46422	transcription start site region 46422	1703 bp upstream
Tssr46423	transcription start site region 46423	1742 bp upstream
Tssr46424	transcription start site region 46424	1845 bp upstream