rs36949126 SNP Detail

Summary

• ID
  rs36949126
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:19281141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTAAAGAG AACGTCGCCC ATAGTAAACA TAGCACTGGC
  GGAGCTAGAG CCGCGGTGGA AATAGCTCTG GGTATATACA TAGAGGAATT ATCCTAATCA
  S
  TGTGGTGCTA GTTCTTTGGT TATGAATAAC ATAAAGGGCT AAGTGGAAAA TGAGGGAGGG
  CTAGGCGGGG AAGGGAGTGG AGAAGAGTAA AAGTGGGAAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916942	NES13479747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36949126					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916942	NES13479747	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19281141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi65	CpG island 65			482 bp distal
Rr408238	regulatory region 408238			1947 bp distal
Rr408239	regulatory region 408239			within coordinates
Rr408240	regulatory region 408240			647 bp proximal
Rr408241	regulatory region 408241			1148 bp proximal
Tfap2b	transcription factor AP-2 beta			Intron
				mRNA-UTR
Tssr6030	transcription start site region 6030			1950 bp downstream
Tssr6031	transcription start site region 6031			1923 bp downstream
Tssr6032	transcription start site region 6032			1906 bp downstream
Tssr6033	transcription start site region 6033			1884 bp downstream
Tssr6034	transcription start site region 6034			1864 bp downstream
Tssr6035	transcription start site region 6035			1828 bp downstream
Tssr6036	transcription start site region 6036			1816 bp downstream
Tssr6037	transcription start site region 6037			1791 bp downstream
Tssr6038	transcription start site region 6038			1764 bp downstream
Tssr6039	transcription start site region 6039			1740 bp downstream
Tssr6040	transcription start site region 6040			1187 bp upstream
Tssr6041	transcription start site region 6041			1354 bp upstream
Tssr6042	transcription start site region 6042			1528 bp upstream